For large codebase refactors, Claude Code is usually the better default if the main challenge is deep architectural understanding and cross-file reasoning.[1][2] It tends to be especially strong when the refactor is legacy-heavy, ambiguous, or requires you to explore the codebase interactively while deciding the design.
That said, Codex is often the better choice for long-running, repository-wide refactors where execution discipline matters more than exploratory reasoning.[1][3] It has a stronger fit for isolated environments, background work, test-running, PR-oriented workflows, and staged migrations.
Practical rule of thumb
Best overall answer
If the refactor is complex but well-specified, I’d lean Codex for the implementation phase.[1] If the refactor is architecturally messy or still being discovered, I’d lean Claude Code for analysis and design, then use Codex to execute the plan.[1][2]
So the short answer is: Claude Code for understanding and steering; Codex for large-scale execution.